RnoEX0017790 @ rn6
Exon Skipping
Gene
ENSRNOG00000052954 | Ccdc173
Description
coiled-coil domain containing 173 [Source:RGD Symbol;Acc:1308818]
Coordinates
chr3:55996499-56015901:-
Coord C1 exon
chr3:56015762-56015901
Coord A exon
chr3:56003524-56003688
Coord C2 exon
chr3:55996499-55996930
Length
165 bp
Sequences
Splice sites
3' ss Seq
CATTGCCATTAAACATCTAGATG
3' ss Score
4.27
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATAATATGCGTGATAAAAACATCATCCGAGCTGTAGAACAGCAGCAGCAAGAGGAAGAAGAGGAAAAGACTAGAAAGTTTATCAAAGCCAAAAAACGTCTTATACAAATGAGGAAAGACAAAGAAGCTGAAACACACAG
Seq A exon
ATGAAAAATAAAGAGGAAGAAGAAAAACAAAGGAAAATAGAGTCTAAGGAAGAATTGCAGGCTGTCTTGAAGGCAGATAAGATGTTCCAGGAGCTTGAAAAGGAGAAAAAACTCAAAGCTAACAAAGAGAAACTGGAAGTTCAAGACGCTCACATTCACCAAATT
Seq C2 exon
GCCCTAAATAAGTTTAATTCAAAACAATTGAAGGAAGAAGACTTAAATTATTGGAGACTTACTGAAGCCCTTGCAGTTGAGAAGGAGAAAGAATTTGAGAAGTATGCCAGAGAAGTAATTAATTTTGAATCTGAATCAACAAAGAAATACACCTACCCTATGGTAAAAGCTGTGCAGGAAGGAGTGGGAGGTGGACGTGGACCACCCTTTGTAGGCAGAGGTGGGATAAGACCAAGCTATCAGGCAAATGATGTCACTGGCGTCCAGCTCCCTTTTTATAACAGTCAAGGATCAAAGTATGATTTTCAGAAGTCAAAGAGAAGGCTAGGTTTTACTTGGTAAAAAAGTTAATATTTTGATTGAAAATTTTTTTGTAATGAGCTACAAATATAATGGAATTTCTGATAATAAAGTCACTACTCGTCTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052954_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=0.382 C2=0.080
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(13.8=100)
A:
PF138681=Trichoplein=FE(16.2=100)
C2:
PF138681=Trichoplein=PD(12.0=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAAAGAAGCTGAAACACACA
R:
GGTCTTATCCCACCTCTGCCT
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]