BtaEX6009189 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26682408-26690420:+
Coord C1 exon
chr2:26682408-26682600
Coord A exon
chr2:26683266-26683430
Coord C2 exon
chr2:26690076-26690420
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCTTCTATCATCTAGATG
3' ss Score
9.11
5' ss Seq
ATGGTAGTT
5' ss Score
2.4
Exon sequences
Seq C1 exon
GCTAATGGAGGAACGGAGAAAAAGGATAAATAACTTCCTGAGTAAGCTAATGAAAGAGAAATTTGACAATGAAGATTTGATTATTGCTAGAGATATTGCAGAAGCTGAGGCTGAGTGGGAAAAAAGAGAAAGAGAAAAGTATGAAAAAAACAAAGCAGAATTAAAAGCAATCGCAGAACATAGAGCTCTTGTG
Seq A exon
ATGAAGAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAAGCTACAGAACAAATGCTAGCTATCTTAAAAGCAGACCAGATTTTCTGGGAGCATGAAAAGGAAAAAAAGCAGAAAGCTGATAAAGAACGTCGAGAAGTTCAAGATGCCCATATTCAGCAAATG
Seq C2 exon
GCCAAACATAAGTTTAATGCACTGCAAGCAAAACAAGCAGAATCAGAGTACTGCAGACTTACTGAAGCACTTGTGGCTGAAAAGGAGAAGGAATTTCAGGATTATGCCAGAGAAGTAATCGAATCTGAATCTGAATCGACAAAGAAATATATTTATCCTCTTGTAAAAGCTGTACAGGAAGGACCTGGAGGTGGCCGTGGACCAGTTTTAGTGGACAGAGGTGGATTAAGACCCAGCTATCAGGCAAATGATACCACTGGAGTCCAGCTCCCTTTTTATAACTCTCCGGGATCGAAATATAATAATTTTCAAAAGTCTAAGGGAAGGCTAGGTTTTACATGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090-'9-12,'9-9,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.545 C2=0.272
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(18.8=100)
A:
PF138681=Trichoplein=FE(15.9=100)
C2:
PF138681=Trichoplein=PD(13.5=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATCGCAGAACATAGAGCT
R:
CCACTAAAACTGGTCCACGGC
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]