MmuEX0001713 @ mm9
Exon Skipping
Gene
ENSMUSG00000070883 | 4930578N16Rik
Description
RIKEN cDNA 4930578N16 gene [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69596090-69610181:-
Coord C1 exon
chr2:69609989-69610181
Coord A exon
chr2:69599779-69599943
Coord C2 exon
chr2:69596090-69596522
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCATTAAACATCTAGATG
3' ss Score
5.48
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GCTAATGGAAGAACGGAGAGAAAGAATAAATAATTTCCTAAGTAAACTAATAAAAGAGAAACTTGATACTGAAGATTTGATTATTGCTAGAGATATTTCTGAAGCTGATGCTGAACTGGAGAAAAGAGAAAAAGAAAAACATGAAAAAAATCAAGCAGACTTGAAAGCAATTGCAGAATATAGAGCCTCTGTG
Seq A exon
ATGAAAAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACTGGAAATTCAGGATGCTCACATTCAGCAAATA
Seq C2 exon
GCCATAAATAAATATAATGCAAAACAAATGAAGGAAGAAGAATTAGATTATTGGAGACTTACTGACGCCCTTACAGTTGAGAAGGAGAAAGAATTTGAGAAGTATGCTAGAGAAGTAATTAACTTTGAATCTGAATCAACAAAGAAATACGCCTACCCTATGGTAAAAGCTGTGCAGGAAGGAGTGGGAGGTGGACGTGGACCACCCTTTGTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATGCCACTGGGGTCCAGCTCCCTTGTTTTAAAAGTCAAGGATCAAAGTATAATGATTTTCAGAAGTCGAAGAGAAGGCTAGGTTTTACTTGGTAAAAAAGGTCATATTTTGATTAATAAAATTTACTGTAATGAGCTACAAATATAATGGAATTTCTGATAATAAAGAGACTACTTATGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883-'10-11,'10-9,11-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.200 C2=0.079
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(19.1=100)
A:
PF138681=Trichoplein=FE(16.1=100)
C2:
PF138681=Trichoplein=PD(12.2=35.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGACTTGAAAGCAATTGCA
R:
CTACAAAGGGTGGTCCACGTC
Band lengths:
254-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: