MmuEX0020852 @ mm9
Exon Skipping
Gene
ENSMUSG00000087040 | Gm14033
Description
predicted gene 14033 [Source:MGI Symbol;Acc:MGI:3650902]
Coordinates
chr2:55264226-55285846:+
Coord C1 exon
chr2:55264226-55264302
Coord A exon
chr2:55273467-55273818
Coord C2 exon
chr2:55284464-55285846
Length
352 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCATTCTCCTTAAGGAT
3' ss Score
9.25
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTGTCCTGAAGCATTGCCTTGTCCAGGATAGACCAATATTTTGTTCTATGTAGACCTTCAGTCTCTGTCACATCAAG
Seq A exon
GATGGCGATGTCCCACAGAGCAAGAATCTTTATCTTCTGCCAACTTACCAGTTTCCCTGGACCATTTCTGAGCAACTAATTCTGGAACTGCACTGAGATGGCACTGTGTGCTCTACACATGATACCCACTACCCATACTGAAACAGAAATTAATCATCCTTTGAGCATTCCATGATTTTGAAATCAAGCTTATTCAAAAGAACTTCTCTAAAGCTCCCTGCTTTTTTAGAGTGGGACTAAGGCCCACAATCTACAGCCACTTTCACAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAACAAAAAAAACCAAAAAAAAACAAAAAAACAAGAAAAGAAATATTAATGAAACAG
Seq C2 exon
GTTAGTTTGCTTGTGATCTACCACCTTATCTTCAAACAGAAGACTCCAAATGTTTATGCCTTCTGCAATTTTTTTCCCCTGACTTTTATGTCAGTTGTGCCCTGGTATGTAATTCTGTGCCTTTGCCACATTTTGACCCAGTCCATGCATAAGGTTTGCCCTCAGTTTATCCAATACCATCGGATTCAGTGGCCTTCTGTCATCTGTTCTCCACACAATCGCCTGGCCTCAGCACTGTGTGGCTGGCTGCCCTCCAGATCCTCATCCTGGAAGCAGCTGTCCTCACAAGGAGAGAGGAGCTTGGTTCATCTGTAAATATTTTCAAGGAGCGGGACTCAATGTCACAAAGAGGTCAAGGCTTCAGTCATGTGGGAAGAGTGACATGATAGCATATGAGAAACGATTAAACTTAGCAGGCAGTACTGTGCCTCTAAAGTGACAGAGACCTAAAGCGAACCAGTGTATATTAGAAGCCTTGCCTTACTGTCTTTCTAGCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087040_MULTIEX1-3/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAAGCATTGCCTTGTCC
R:
AGCTGCTTCCAGGATGAGGAT
Band lengths:
352-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: