MmuEX0020852 @ mm10
Exon Skipping
Gene
ENSMUSG00000087040 | Gm14033
Description
predicted gene 14033 [Source:MGI Symbol;Acc:MGI:3650902]
Coordinates
chr2:55411815-55433435:+
Coord C1 exon
chr2:55411815-55411891
Coord A exon
chr2:55421056-55421407
Coord C2 exon
chr2:55432053-55433435
Length
352 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCATTCTCCTTAAGGAT
3' ss Score
9.25
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTGTCCTGAAGCATTGCCTTGTCCAGGATAGACCAATATTTTGTTCTATGTAGACCTTCAGTCTCTGTCACATCAAG
Seq A exon
GATGGCGATGTCCCACAGAGCAAGAATCTTTATCTTCTGCCAACTTACCAGTTTCCCTGGACCATTTCTGAGCAACTAATTCTGGAACTGCACTGAGATGGCACTGTGTGCTCTACACATGATACCCACTACCCATACTGAAACAGAAATTAATCATCCTTTGAGCATTCCATGATTTTGAAATCAAGCTTATTCAAAAGAACTTCTCTAAAGCTCCCTGCTTTTTTAGAGTGGGACTAAGGCCCACAATCTACAGCCACTTTCACAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAACAAAAAAAACCAAAAAAAAACAAAAAAACAAGAAAAGAAATATTAATGAAACAG
Seq C2 exon
GTTAGTTTGCTTGTGATCTACCACCTTATCTTCAAACAGAAGACTCCAAATGTTTATGCCTTCTGCAATTTTTTTCCCCTGACTTTTATGTCAGTTGTGCCCTGGTATGTAATTCTGTGCCTTTGCCACATTTTGACCCAGTCCATGCATAAGGTTTGCCCTCAGTTTATCCAATACCATCGGATTCAGTGGCCTTCTGTCATCTGTTCTCCACACAATCGCCTGGCCTCAGCACTGTGTGGCTGGCTGCCCTCCAGATCCTCATCCTGGAAGCAGCTGTCCTCACAAGGAGAGAGGAGCTTGGTTCATCTGTAAATATTTTCAAGGAGCGGGACTCAATGTCACAAAGAGGTCAAGGCTTCAGTCATGTGGGAAGAGTGACATGATAGCATATGAGAAACGATTAAACTTAGCAGGCAGTACTGTGCCTCTAAAGTGACAGAGACCTAAAGCGAACCAGTGTATATTAGAAGCCTTGCCTTACTGTCTTTCTAGCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087040_MULTIEX1-3/9=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAAGCATTGCCTTGTCC
R:
AGCTGCTTCCAGGATGAGGAT
Band lengths:
352-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types