MmuEX0020854 @ mm10
Exon Skipping
Gene
ENSMUSG00000087040 | Gm14033
Description
predicted gene 14033 [Source:MGI Symbol;Acc:MGI:3650902]
Coordinates
chr2:55422228-55433435:+
Coord C1 exon
chr2:55422228-55422430
Coord A exon
chr2:55428449-55428580
Coord C2 exon
chr2:55432053-55433435
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCTCCCCCATGCAGTTT
3' ss Score
10.21
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
TTTCAGAGGTGGCCTTTTAGTTTTGGATTTTATTTGGACCACTTAAAGAAGTATGGGTATGTCCTGCTTGTTGGAGAAGAAGAGATTCAAAGACATCTCTGCCACTGAAATGCACCTAGTATAGATGATGGCTTATGAAGCTGGAACTTTGAGTGTATACACAATGTCAGGCAGCTCAACAGGTTGTGGTGTCTTCCTGGCAG
Seq A exon
TTTTCGAGCAGCCTTTAGTACTGGAAGATGCTAAAGCATCAGCAATGGGGAATTTCTACTTTCTAGCCACATCTATCAAAGCTGAGACCCGAAATAGCCCTGGGACTCCCATGGTCCGTCACAGGGTCTGAG
Seq C2 exon
GTTAGTTTGCTTGTGATCTACCACCTTATCTTCAAACAGAAGACTCCAAATGTTTATGCCTTCTGCAATTTTTTTCCCCTGACTTTTATGTCAGTTGTGCCCTGGTATGTAATTCTGTGCCTTTGCCACATTTTGACCCAGTCCATGCATAAGGTTTGCCCTCAGTTTATCCAATACCATCGGATTCAGTGGCCTTCTGTCATCTGTTCTCCACACAATCGCCTGGCCTCAGCACTGTGTGGCTGGCTGCCCTCCAGATCCTCATCCTGGAAGCAGCTGTCCTCACAAGGAGAGAGGAGCTTGGTTCATCTGTAAATATTTTCAAGGAGCGGGACTCAATGTCACAAAGAGGTCAAGGCTTCAGTCATGTGGGAAGAGTGACATGATAGCATATGAGAAACGATTAAACTTAGCAGGCAGTACTGTGCCTCTAAAGTGACAGAGACCTAAAGCGAACCAGTGTATATTAGAAGCCTTGCCTTACTGTCTTTCTAGCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087040-'8-13,'8-10,12-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCAGGCAGCTCAACAGG
R:
GACAGAAGGCCACTGAATCCG
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types