MmuEX1011708 @ mm10
Exon Skipping
Gene
ENSMUSG00000087040 | Gm14033
Description
predicted gene 14033 [Source:MGI Symbol;Acc:MGI:3650902]
Coordinates
chr2:55415041-55421350:+
Coord C1 exon
chr2:55415041-55415131
Coord A exon
chr2:55416009-55416177
Coord C2 exon
chr2:55421056-55421350
Length
169 bp
Sequences
Splice sites
3' ss Seq
CATTTTCATTTTAATCTCAGGTA
3' ss Score
7.02
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GATCTATCATTAATACCAAAAAGGACCTTCTGACCCCTGCCTACGGCTTGGTGAAAACGAAGGAGAGCGCACTATTTCTGCTTGTTTAACA
Seq A exon
GTATGGGATATGAGGCTGCTTCATATTGTCCACAGGAGTTGGCTATGATTTGCCTCACGTTCTGGTGTGGAATGATTCTGAGAACTGCAGATAGTTTCTGTGATTGAGTGATGTTTGGAGTTCTGGATTTTTTTTTTCATATTGTATGAACATACTAGGACCCAGAGAG
Seq C2 exon
GATGGCGATGTCCCACAGAGCAAGAATCTTTATCTTCTGCCAACTTACCAGTTTCCCTGGACCATTTCTGAGCAACTAATTCTGGAACTGCACTGAGATGGCACTGTGTGCTCTACACATGATACCCACTACCCATACTGAAACAGAAATTAATCATCCTTTGAGCATTCCATGATTTTGAAATCAAGCTTATTCAAAAGAACTTCTCTAAAGCTCCCTGCTTTTTTAGAGTGGGACTAAGGCCCACAATCTACAGCCACTTTCACAAAAAAAAAAAAAAAAAACCAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087040-'2-4,'2-3,3-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCGCACTATTTCTGCT
R:
GCAGGGAGCTTTAGAGAAGTTCT
Band lengths:
251-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types