MmuINT0074018 @ mm9
Intron Retention
Gene
ENSMUSG00000026959 | Grin1
Description
glutamate receptor, ionotropic, NMDA1 (zeta 1) [Source:MGI Symbol;Acc:MGI:95819]
Coordinates
chr2:25153914-25159329:-
Coord C1 exon
chr2:25159246-25159329
Coord A exon
chr2:25154056-25159245
Coord C2 exon
chr2:25153914-25154055
Length
5190 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
GTTCTTATCTTTCCGTGCAGATA
3' ss Score
9.91
Exon sequences
Seq C1 exon
GTCATCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAGAGACAGAGAAGCCTCGAGGATACCAGATGTCCACCAGACTAAAG
Seq A exon
GTGGGGACCCCACACTCCCCAATATTACCATCTGTGATGTTTCATCTATTCCTTCAGGCCAGGGGGAAAGGGGATGAAGTCACAGAACACAGATAGAGGAGGTGGAGGCTGTGCCAGCACCTGGCTCTGGCGCACATGGCAGAGGAAGCAGGTGTGGAGGTGGGGGAAGGAGGAGCAGCAGTTTCTGCCCAACAGGGTCTTTGCAGTACTCTATCCTGGCCCAGCTCTAGTCCAAGGAAGAACTGGCAGAGGCAGAGGGACAGTGGGTGGATGCTTTGGGTCCCAGTGCAGAGTTTAGCTTTAAAAAGTGTCCTATTTCTCCTTGGGCACCCAGGAACCCCTTCTTAAGCTGTCTTCTTCCTGTATAGTCTCTTTTCCTCGGCCTGATTTACACTTTCCTTGGGTTCATCCATGGACCCCTCCCTCTGCCTAAGGGCTATTCTGAGAATTCCTCTTTACGATGAGCCACAGTGTTCCCAGCTCTGATACTGTAGATCACCAAAGGCAGCCTCTGCAGTGCCAAGTGCCTAGCCAACCTTCTCTTAGTGCCTTCATCAAATGTCTCAGCCCTACTAACTCTCTGAGCTAACCCCTGCAGTGGGGGCTCATTCTCCAGTGAGTACCTGCCTGCAGTTCTCACAGGACAGTGAGAGTGTCGCCTTGCAAGGCCTGTGTGATAACTGTTTGCAGTTCAGGCACCTAGTGTTGAAAAGTGTGAGAGTGCAGGGAGGTGGTGGCATGTCCCTTTAATCCCAGAGGCAGCGGCACACAGATCTCTATGGGTTTGAGGCCAGCTTGGTCTACACAGCTTATTCTAGGACAGCCAGGGCTACACAAAGAAACCCTGTCTTGAAAAGCCAAGGGGGAGGGCTGGAGAGATGGCTCAGCCCTTAGTAGCATTGGCTGCTTTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCAACGCCCTTTTCTTGTGTCAGCGACAGCATGTTCATATACATAAAATAAATAAGACTTAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGAAAGAAAAGGAAGAAAAGAAAAGTCTAGGGAGAGAGGGGGTCTGAAGGCTGTAGTCAAACATCGATAACCAGAAGCATCCATCACGATGCCAATGGCTGTTAGGAATGTTTCTGGCCTCACTGGTTTGTTCAATTTGATTTTATATGTATGAGTGTTTTGCCTACCTGTATATGTAGATACCATGTGCTCTCCTGGTGCCCACAGAATTCAGGATATTGGATGGCCTGTAACTGGAATGGATGGTTGTAAGCCACCGTGTGGGCGGTAAGAACAGAAACCGGGTCTTCTGTAAGACCTTCGGGTGCTCATAACTGCTCACCCACTTGTCTAACCCCATCACTAATTTTTTTTTTTTTGACAGCGCTAGCAAAAACACATAATAGAAAAATATGATCCTGCTTCCTTCTCTCTTCCTTCTCAAGACTCCCAGTGAGGGCACCTCCTCCAGTGCCTGTCACCATGCCTTGCCTCACTGTCCACTCCTGCCTGGGCTACCTACCCCTCTGTTTTTTGCATCCGATATAGACCCTCAGAAACCAACTGTGTTCCACTCTGGCATCCCCCAGACTTCTACCTGTCCCTCAACTATGAAACTGTAGACCCTAGAGAATAGGGAGGGAGAATGTCAAAGCTGAAGAGGCAGCCTTGAAAGAGAAGCATTAACTAGGCATGGTGGAGCATGCCTTTAAACCCAGCACTTTGGAAGTAGATGAACAAGAATCAGAAGTTCAAGGTCCTCCTCAGCTAAAAGCCAGCAGGGACAGCCTTGACTCTATGAAGGCTCTTTCTTTTTTGTGGTGGGACATCAAGAAGAGTTCATTTGGCTTAGACTTTCATATTGTGTTCCATCATTGAAGGAAGTCAGGACAGGAACTTAAACCGGGCAGAAGCCTGGAAGCAGGAGCTGATGCAGAGGCCCTGGAAGGGTGCTGTTGATGCAGAGGCCCTGGAGGGGTGCTGCTGATGCAAAGGCCCTGGAGGGGTGCTGCTGATGCAGAGGCCCTGGAGGGGTGCTGTTGATGCAGAGGCCTGGAGGGGTGCTGCTGATGCAGAGGCCTGGATGGGTGCTGCTGATGCAGAGGCCCTGGAGGGGTGCTGTTGATGCAGAGGCCCTGGAGGGGTGCTGTTGATGCAGAGGCCTGGAGGGGTGCTGCTGATGCAGAGGCCTGGAGGGGTGCTGCTGATGCAGAGGCCTGGAGGGGTGCTGCTCACTGGCTTGCTCCTTATGGCTTGCTTGGCTTGCTTTCTTATAAAACCCGGAACCACCCGCCCAGGGTGGCTTCACCTACCATGGGTTTGCCCCTCTCTCCTTCAATGGCTATTTAAGAAAATGCTTTACAGGCTGGCCTATAGCCTAATCTTATGGAGGAATTTTTTCTATTTTTTAAAATTAATTTATTCCTCTCTAGTGTATTACATCCCAACTGTACTCTCCCTTTCATCCCTGTCTTAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGCATGCCAGGCAATGGTGACACACACTTTAATTCTGTCACTCAGGAGGCAGAGGCAGGAACAGATAAATCTCTGTGAGTTCAAGGACAGCCTGGTCTACAGAGCAAATTTCAGGATAGCCAGGGCTACACAGAGAAACCTTGTCTTGGAAAAAACAAACAAACAAACACAAAACAAAAAACAACAAACAGGAGCTGTAGAGATGGTTCAGTGGTTAAGAGCACTGGCTGCTCTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTACAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCCACAGTGTATTCACATACATAAAATAAATAGGTCTCAAGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGAGCTATAAAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAATCTCTCTAAAAAACAAACAATGCTGAGGTGGTAGGAAATACCTTTAATCCTTGTATTCAGTAGGAAGAGTGGGGTGGAGCTCTGTCAGTTCAAGGCCAGCATGGTCTACAAAACAAGTTCCACACCAGCCAGAGCTACAAGGCAAAGATACAAGACCCTGACTAAAAAAAAAAAAAAAAAAACAGGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCTAGAGTTCAAATCCCAGAAACCACATGGTGGCTCACAACACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGAGTGTCTGAATACAGCTACAGTGTACTTGTATATAATAAATAAATCTAAAAAAACAAAAAATAAAAAAGTAACTAGCCCAGTGGGTCACATGAATGTGGATCCCAGCACCCATGTAAAAGTCTGGACATGGCTGCACACTGTGCCCATCATAGCCCTTGGTAGAAGGAGTGGGCAGAGGCAGGTTGGTCACAAAGCTGGCTGACTAACCAATGCAGCACAGTTACTGTGCTCCAGGCTTAGAAGAAAACTTGTCAAAAATAATATTAGTGATAATGATAACAATAATAAAAAACAGTGGGACTGGAGAGATGGCTCAGTGGTTTAGAGCCCTGGCTATTCTCCCATAGGACCCGGGTTCAAGTCCCAGTACCCACACAGCAGCTCACAACCATCTGTATCTATAGTTCCAGGGGATCTAATGTTCTTTCTGACCTCTGTGGGTTCTGTATGCACCTGGAGTACAAACGTGTATGCTGGCAAAACACCCATACACTTAAAATAGAGAAGATATTCTCTCAGAGGTTAAGAGAAATTGTTGCTCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAACTGGGCTCAGTTCCCAGCACCCACATGGTAGTTACAACTATGTGTAGCTTCAGTTCCAGGGGATTTGACGCCTCCTTCTGGTTTCTGTGGACCCCTGCATGTACGTGATACACATACATACACTGAGGCACACACACACACATAAGATAAAAACAAAAGATAAATATATAAGTGATAAAAGTGATAGAGAAAGACATGGGGCATTATCCTCCATCCTCTGTGTACTTGCTCATATACATGAATACACAGGAACACATACATACATATAAACATATACATACATGTAAACATGTATACATATATACATACATATAAAACTACCTAAAAGGTAGTTTTTTAAAAGATGAGGATCAAAGACTGAAGGCTACATGCCCATGGAGGCCAGGGTAGCTTTGGAAAGGACACAGCCTTTCTGCTCCCTGATTTGTCCGAGACAGTGCCTGGTGCACACTTCCTGCACAGTAGCACTATGATAGAATAATGTATAAAGGGGCTGGAGAGATGGCTCAGTGGTTGAGAGCACTGACTGCTCTTCAGAAGGTCCTGAGTTCAATTCCCGGCAACCACATGATGGCTCACAACCATCCGTAATGAGATCTGGCACCCTCTTCTGGAGTGTTTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTTTTTAAAAAATCTGAAAAATAAAAGAAGAATGTATAAGCTTAAGCTGCAGCCTGAGAGAAAGGGGCCACAGGAGAGGTCGCAGTACTGCAGGATGCATTTTTTGATGAGTCAGGGCAGGTGGCTATAGATGTCTGTGCCCTGCCTCAGCATCACCACAACCCCAGACCTGGATCTGTCCCCAAGGGTAGCAGGCAGGCAATACTAGCCATGTCAGAAGGATGTGGACTGACTGAAAATCAGAGGGAGGCTTTAGGCTTGGGATTTACTGCAGCACTGGAAAACATGAAGAAGAAGGTCACTGTGTGCTGAGGAGCCAGCACCTGGAAATGACCAAGGCCAGGTGGCCCCGGCTAGTTCTTATCTTTCCGTGCAG
Seq C2 exon
ATAGTGACAATCCACCAAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGATGGCACATGCAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTACGGGGCCTAATGACACATCCCCAGGAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026959-Grin1:NM_008169:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: