GgaINT0126082 @ galGal4
Intron Retention
Gene
ENSGALG00000008898 | GRIN1
Description
glutamate [Source:RefSeq peptide;Acc:NP_996862]
Coordinates
chr17:1017366-1018642:-
Coord C1 exon
chr17:1018559-1018642
Coord A exon
chr17:1017502-1018558
Coord C2 exon
chr17:1017366-1017501
Length
1057 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TGCTTGTGCTTTCCCTACAGATC
3' ss Score
12.21
Exon sequences
Seq C1 exon
GTCTTGACCAACGACCGGAAGATAATCTGGCCAGGAGGAGAAACTGAGAAACCTCAAGGCTATCAGATGTCGACCAAACTGAAG
Seq A exon
GTAACAACAAATGGCTGTAGGTGCTGTGACTTCATCCACGTCCTGCTGCTGCCCCTACAGCTGCCAGAATCTTTCATTCCAGAGAGGTCATAGCAAAGGCACTTAGCAAAGGTGCTAGAGAGTGTTCAGAGCAGAGCACAGCTTCCTTCTGGAGCCCAACTGTAAGTGTGGCACCCTCTGGTTTAGGAGACAGCTGGAAATGGGGTATGAGAGAGAGTGACAGAGTGGAGGGAGAAGGTGTTCGTTTTTCCTCATGGCATGGGAGTCAGAGGGCACTTGGCAAAGGCTTGCAGCACATAGAGCCAACACAAGGCTCATATCTGGAGCCCTTTGCTGCTGAGGCCAGAAGATCAGAAGGAAATATGTTCAGAAGGTGATTAAACAAGCTAACAAAGAGTAAGTGGGCTGATAGCTGCAGAGCTGGGCTCAGGAAATCTGTGAACAGCCAATTGCCAAAAGCTGGATATGACAGTGGGGGAATGCCCCTCCATTCTTGCTCTGCTTGTCATACCTTTCTCTGCAGCCTCTTTGGTGATTGGGCAAGTTGGTCTTGCTAGTGCTCCTCTTTGCTGGTCCTTCTGTCCAGGCAGGGTGAATCACACACTTCTACTGGCTGTGAGCCTGGACTCCTGCAGAGGTGGTGCAGAGGCATTGGGATGCTGCTTTACTAAGAATGTCCTGGGTAGGACTGGAAGACTCACATTTGCTCATGGCAGCGTGATAGAGACTAGAACACAGGCCAGAGCACGAATCCCAGCAGTGCAGTGACTCTGATCAGTCTGCACTTATGGCAATGGGTGAGAAGGACTTTGAGGACAGGGAAAAATTTCCACATGAGGAAGGCTGGCTTGTCTGATCCTCATCTTGGAGAGAAGACAACTGAATGTCTCCCCATGCCAAAGTCAGGTCCTGCTGCAGGACTGTGTGATCCATGGGGATGGCACTGTGGCATTATGGCCATGTTTGCATGGAGAGGACAGCCCCACCATTCCACATCCAGGTGGGGACGGCTCTGGAAGGGGATGGTGGCAATTGAGTGCTTGTGCTTTCCCTACAG
Seq C2 exon
ATCGTAACAATTCATCAAGAGCCCTTTGTGTATGTGAAGCCCACGCAAGCAGATGGGACGTGCAGGGAGGAATTCACCATCAATGGTGACCCTGTCAAAAAGGTCTTTTGCACAGGGCCCAACGAGACCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898:ENSGALT00000040369:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGACCAACGACCGGAAG
R:
GATGGTCTCGTTGGGCCCT
Band lengths:
216-1273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]