MmuALTD0003990-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:70893909-70894655:+
Coord C1 exon
chr2:70893909-70893973
Coord A exon
chr2:70893974-70894176
Coord C2 exon
chr2:70894552-70894655
Length
203 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
AAATTCTTTGTGTCTTTCAGGAG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTCGCTACCTCTTGATCTCTGCCCCGAGTCCCCAGCGCGGGGTCCCGCGTCAGCCTTCCTTTGAG
Seq A exon
GTTCGCAGGTGGCGGCTGCCACCCCTCGCGGAAGTGAGGGGCGCGCCCCTCCTGGGCCCTGCGGACCCCTAGTCTCCATGGGCCGGACCCGGAAGGCCAATGTGTGCCGCAGGCTGAGTCGCCGGGCTCTGGGCTTCTATGCACGCGACGCAGGCGTGGTGCAGAGGACGAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAG
Seq C2 exon
GAGAGTACTAAATTTAAGAATGTTTGGACAACTCATTCCAAGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAATTACCGGTGCTGTGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966-1-6,2-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACCTCTTGATCTCTGCC
R:
CTGACACAGCACCGGTAATTGT
Band lengths:
164-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: