Special

MmuEX0021420 @ mm9

Exon Skipping

Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32153041-32154158:+
Coord C1 exon
chr2:32153041-32153097
Coord A exon
chr2:32153274-32153354
Coord C2 exon
chr2:32154120-32154158
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGCATGCGCCTCAGAAC
3' ss Score
5.88
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCTACATCCTACATCAACGGGGAGGGCCTCACATCTTCCAACATGAAGGAACTGGAG
Seq A exon
AACCGGTACCAAGAGCTAGCAGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAGTAGCACGATAGAGGAATTG
Seq C2 exon
AAACAACAGAACCAAGACACTCTGGATCAACTGGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.909 A=0.362 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF090796=Cdc6_C=PU(26.7=84.2),PF053776=FlaC_arch=PU(10.9=26.3)

							
A:
PF090796=Cdc6_C=FE(43.3=100),PF053776=FlaC_arch=FE(56.5=100),PF106024=RPN7=PU(12.5=22.2)

							
C2:
PF090796=Cdc6_C=FE(20.0=100),PF053776=FlaC_arch=FE(26.1=100),PF106024=RPN7=FE(25.0=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000097768





     
                   









    
Main Skipping Isoform:
ENSMUSP00000114169





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000080374, ENSMUSP00000109002, ENSMUSP00000109004, ENSMUSP00000109013, ENSMUSP00000114935, ENSMUSP00000117476, ENSMUSP00000133120
          









    
Other Skipping Isoforms:
ENSMUSP00000115003, ENSMUSP00000121886
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr9:128267194-128267274 
ALTERNATIVE
HsaEX0027950
(GOLGA2)
Human
(hg19)
chr9:131029473-131029538 
ALTERNATIVE
HsaEX0027950
(GOLGA2)
Rat
(rn6)
chr3:11327078-11327158 
ALTERNATIVE
RnoEX0039179
(Golga2)
Cow
(bosTau6)
chr11:98888035-98888115 
ALTERNATIVE
BtaEX0000406
([1])
Chicken
(galGal4)
chr17:5001366-5001446 
ALTERNATIVE
GgaEX0006706
([2])
Chicken
(galGal3)
chr17:5633428-5633508 
ALTERNATIVE
GgaEX0006706
(GOLGA2)
Zebrafish
(danRer10)
chr5:1410173-1410253 
HIGH PSI
DreEX6008902
(golga2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCTACATCCTACATCAACGGGGA

				
R: 
TTCTCCAGTTGATCCAGAGTGTCT

				
Band lengths: 
95-176

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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