HsaEX0027950 @ hg38
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128266287-128267517:-
Coord C1 exon
chr9:128267458-128267517
Coord A exon
chr9:128267194-128267274
Coord C2 exon
chr9:128266287-128266325
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAG
Seq A exon
AGCCGGTACCAACAGCTAGCGGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAATATCACGATAGAGAAATTG
Seq C2 exon
AAACAACAGAACCAAGAAATTACGGATCAGTTGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110_MULTIEX3-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=0.074 C2=0.808
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(8.5=50.0)
A:
PF0157614=Myosin_tail_1=FE(22.2=100)
C2:
PF0157614=Myosin_tail_1=FE(10.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCGACATGTGTCAATGGG
R:
TCCAACTGATCCGTAATTTCTTGGT
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development