HsaALTA1043293-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128267194-128267517:-
Coord C1 exon
chr9:128267458-128267517
Coord A exon
chr9:128267260-128267274
Coord C2 exon
chr9:128267194-128267259
Length
15 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
Exon sequences
Seq C1 exon
TCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAG
Seq A exon
AGCCGGTACCAACAG
Seq C2 exon
CTAGCGGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAATATCACGATAGAGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-17-13,17-12,17-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(8.5=50.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCGACATGTGTCAATGGG
R:
TTGTTTGTTTGTTACATAGCTGGAGT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains