RnoALTA0016834-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11326847-11327158:+
Coord C1 exon
chr3:11326847-11326903
Coord A exon
chr3:11327078-11327079
Coord C2 exon
chr3:11327080-11327158
Length
2 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
Exon sequences
Seq C1 exon
TCTACATCCTACATCAACGGGGAGGGCCTCACGTCTTCCAACATGAAGGAACTGGAG
Seq A exon
AG
Seq C2 exon
CCGGTACCAAGAGCTAGCAGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAGTAGCACGATAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-10-10,10-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCACGTCTTCCAACATGA
R:
TCCTCTATCGTGCTACTGAGTTGT
Band lengths:
107-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]