GgaEX0006706 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5632918-5635285:+
Coord C1 exon
chr17:5632918-5632977
Coord A exon
chr17:5633428-5633508
Coord C2 exon
chr17:5635247-5635285
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCATGTGCCCATCAGACA
3' ss Score
4.04
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCTACGTCATATGTGAATGGGGAAAGTGGTGTTTCTTCCACTAATATTAAGGAAATGGAA
Seq A exon
ACACGTTACCAGGAGCTGGCAGTAGCCCTAGATTCCAGCAATCTAACTAACAAACAGCTCATTACAAAGATAGAGGAATTG
Seq C2 exon
AAGCAGCAGAACCAAGAAGCAGTGAATCAGCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX4-2/2=1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.887 A=0.454 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCATATGTGAATGGGGAAAGT
R:
CTTCTCCAGCTGATTCACTGC
Band lengths:
96-177
Functional annotations
There are 0 annotated functions for this event