RnoEX0039179 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11326847-11327913:+
Coord C1 exon
chr3:11326847-11326903
Coord A exon
chr3:11327078-11327158
Coord C2 exon
chr3:11327875-11327913
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCTACATCCTACATCAACGGGGAGGGCCTCACGTCTTCCAACATGAAGGAACTGGAG
Seq A exon
AGCCGGTACCAAGAGCTAGCAGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAGTAGCACGATAGAGGAATTG
Seq C2 exon
AAGCAACAGAACCAAGACACTCTGGATCAACTGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=0.333 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACATCCTACATCAACGGGGA
R:
TTTTCCAGTTGATCCAGAGTGTCT
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]