HsaEX0027950 @ hg19
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131028566-131029796:-
Coord C1 exon
chr9:131029737-131029796
Coord A exon
chr9:131029473-131029553
Coord C2 exon
chr9:131028566-131028604
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAG
Seq A exon
AGCCGGTACCAACAGCTAGCGGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAATATCACGATAGAGAAATTG
Seq C2 exon
AAACAACAGAACCAAGAAATTACGGATCAGTTGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.642 A=0.074 C2=0.830
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(15.2=100),PF113073=DUF3109=FE(20.8=100)
A:
PF0157614=Myosin_tail_1=FE(22.2=100)
C2:
PF150351=Rootletin=FE(9.8=100),PF113073=DUF3109=FE(13.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCGACATGTGTCAATGGG
R:
TCCAACTGATCCGTAATTTCTTGGT
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)