BtaEX0000406 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98887207-98888365:-
Coord C1 exon
chr11:98888306-98888365
Coord A exon
chr11:98888035-98888115
Coord C2 exon
chr11:98887207-98887245
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCTTCATCTTACATCAATGGGGAGGGCCTAGCATCTCCTGCTAATATAAAGAATCTGGAG
Seq A exon
AGCCGGTACCAAGAACTATCAGTAGCCCTGGACTCCAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTG
Seq C2 exon
AAACAAGAGAACCAGGAAACTTTGGATCAGCTGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=0.889 C2=1.000
Domain overlap (PFAM):
C1:
PF0252012=DUF148=FE(21.8=100)
A:
PF0252012=DUF148=FE(29.9=100)
C2:
PF0252012=DUF148=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTTACATCAATGGGGAGGGC
R:
TTTTTCCAGCTGATCCAAAGTTTCC
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development