BtaEX0000407 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98886647-98888115:-
Coord C1 exon
chr11:98888035-98888115
Coord A exon
chr11:98887207-98887245
Coord C2 exon
chr11:98886647-98886709
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGCCTCTCCCCGCAGAAA
3' ss Score
13.82
5' ss Seq
AAAGTAATG
5' ss Score
1.16
Exon sequences
Seq C1 exon
AGCCGGTACCAAGAACTATCAGTAGCCCTGGACTCCAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTG
Seq A exon
AAACAAGAGAACCAGGAAACTTTGGATCAGCTGGAAAAA
Seq C2 exon
GAAAAGAAGGAATTTGAGCAGAAGCTTGCAAAGGAGCAAGGGGCTCTGAGAGAACAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=1.000 C2=0.556
Domain overlap (PFAM):
C1:
PF0252012=DUF148=FE(29.9=100)
A:
PF0252012=DUF148=FE(13.8=100)
C2:
PF0252012=DUF148=PD(10.3=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAGTAGCCCTGGACTCCA
R:
TGGAGCTGTTCTCTCAGAGCC
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development