GgaEX1001068 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5001366-5003948:+
Coord C1 exon
chr17:5001366-5001446
Coord A exon
chr17:5003185-5003223
Coord C2 exon
chr17:5003886-5003948
Length
39 bp
Sequences
Splice sites
3' ss Seq
GCATCCATTTTCTTCTGTAGAAG
3' ss Score
7.65
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACACGTTACCAGGAGCTGGCAGTAGCCCTAGATTCCAGCAATCTAACTAACAAACAGCTCATTACAAAGATAGAGGAATTG
Seq A exon
AAGCAGCAGAACCAAGAAGCAGTGAATCAGCTGGAGAAG
Seq C2 exon
GAAAAGAAGGAGTTTGAACAGAAATTTTCTAAAGAGCAAGCAGCACTGAGAGAACAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'9-18,'9-15,11-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.769 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAGCCCTAGATTCCAGC
R:
GTTCTCTCAGTGCTGCTTGCT
Band lengths:
118-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]