MmuEX0021421 @ mm9
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32153041-32154468:+
Coord C1 exon
chr2:32153041-32153097
Coord A exon
chr2:32154120-32154158
Coord C2 exon
chr2:32154406-32154468
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGACTCTTCCCACAGAAA
3' ss Score
10.52
5' ss Seq
AAAGTAATG
5' ss Score
1.16
Exon sequences
Seq C1 exon
TCTACATCCTACATCAACGGGGAGGGCCTCACATCTTCCAACATGAAGGAACTGGAG
Seq A exon
AAACAACAGAACCAAGACACTCTGGATCAACTGGAGAAA
Seq C2 exon
GAGAAGAAGGATTATCAGCAGAAGCTGGCAAAGGAGCAGGGCTCTCTCAGGGAACAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=1.000 C2=0.605
Domain overlap (PFAM):
C1:
PF090796=Cdc6_C=PU(26.7=84.2),PF053776=FlaC_arch=PU(10.9=26.3)
A:
PF090796=Cdc6_C=FE(20.0=100),PF053776=FlaC_arch=FE(26.1=100),PF106024=RPN7=FE(25.0=100)
C2:
PF090796=Cdc6_C=PD(3.3=9.5),PF106024=RPN7=FE(41.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTACATCAACGGGGAGGG
R:
TGCAGCTGTTCCCTGAGAGAG
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: