MmuEX0021421 @ mm10
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32297521-32298948:+
Coord C1 exon
chr2:32297521-32297577
Coord A exon
chr2:32298600-32298638
Coord C2 exon
chr2:32298886-32298948
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGACTCTTCCCACAGAAA
3' ss Score
10.52
5' ss Seq
AAAGTAATG
5' ss Score
1.16
Exon sequences
Seq C1 exon
TCTACATCCTACATCAACGGGGAGGGCCTCACATCTTCCAACATGAAGGAACTGGAG
Seq A exon
AAACAACAGAACCAAGACACTCTGGATCAACTGGAGAAA
Seq C2 exon
GAGAAGAAGGATTATCAGCAGAAGCTGGCAAAGGAGCAGGGCTCTCTCAGGGAACAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=1.000 C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTACATCAACGGGGAGGG
R:
TGCAGCTGTTCCCTGAGAGAG
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types