Special

HsaEX0027949 @ hg38

Exon Skipping

Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128265970-128267517:-
Coord C1 exon
chr9:128267458-128267517
Coord A exon
chr9:128266287-128266325
Coord C2 exon
chr9:128265970-128266020
Length
39 bp
Sequences
Splice sites
3' ss Seq
CCTTTGACTCTTCCCCACAGAAA
3' ss Score
11.04
5' ss Seq
GAAGTAACG
5' ss Score
2.34
Exon sequences
Seq C1 exon
TCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAG
Seq A exon
AAACAACAGAACCAAGAAATTACGGATCAGTTGGAAGAA
Seq C2 exon
GAAAAGAAAGAATGCCACCAAAAGCAGGGAGCCCTAAGGGAGCAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.650 A=0.808 C2=0.510
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0157614=Myosin_tail_1=PU(8.5=50.0)

							
A:
PF0157614=Myosin_tail_1=FE(10.3=100)

							
C2:
PF0157614=Myosin_tail_1=FE(13.7=100)

						

					

				








    
Main Inclusion Isoform:
ENSP00000411598





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSP00000409271, ENSP00000416097, ENSP00000476265, ENSP00000478799
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


hg19




Conservation


Mouse
(mm10)
chr2:32298600-32298638 
HIGH PSI
MmuEX0021421
(Golga2)
Mouse
(mm9)
chr2:32154120-32154158 
HIGH PSI
MmuEX0021421
(Golga2)
Rat
(rn6)
chr3:11327875-11327913 
HIGH PSI
RnoEX0039170
(Golga2)
Cow
(bosTau6)
chr11:98887207-98887245 
ALTERNATIVE
BtaEX0000407
([1])
Chicken
(galGal4)
chr17:5003185-5003223 
HIGH PSI
GgaEX1001068
([2])
Chicken
(galGal3)
chr17:5635247-5635285 
HIGH PSI
GgaEX1001068
(GOLGA2)
Zebrafish
(danRer10)
chr5:1409956-1409994 
HIGH PSI
DreEX6008903
(golga2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGACATGTGTCAATGGGGAGG

				
R: 
TAACTGCTCCCTTAGGGCTCC

				
Band lengths: 
104-143

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Autistic and control brains
  • Pre-implantation embryo development





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