DreEX6008903 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1409812-1410253:-
Coord C1 exon
chr5:1410173-1410253
Coord A exon
chr5:1409956-1409994
Coord C2 exon
chr5:1409812-1409874
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATTGAAATGTTTTGTTTCAGACG
3' ss Score
6.38
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTCGTAATCAGGAGTTATCCGCTGCTCTGGACTCCAGCGCTCTCACCAACACACAGCTCACGTCCAAACTGGAGACTCTG
Seq A exon
ACGAAGCAGTCTCAGGAGCTCTCAGATCAGCTGCAGAAG
Seq C2 exon
GAAAGGAAAGAGTTTGAGCAGAAGTTCACTAAGGAGCAGGGAGCGATGCGAGAACAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.863
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATCCGCTGCTCTGGACT
R:
TAGTTGTTCTCGCATCGCTCC
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]