RnoEX0039170 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11327078-11328225:+
Coord C1 exon
chr3:11327078-11327158
Coord A exon
chr3:11327875-11327913
Coord C2 exon
chr3:11328163-11328225
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGACTCTTCCCACAGAAG
3' ss Score
9.72
5' ss Seq
AAAGTAATG
5' ss Score
1.16
Exon sequences
Seq C1 exon
AGCCGGTACCAAGAGCTAGCAGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAGTAGCACGATAGAGGAATTG
Seq A exon
AAGCAACAGAACCAAGACACTCTGGATCAACTGGAAAAA
Seq C2 exon
GAGAAGAAGGATTATCAGCAGAAGCTGGCAAAGGAGCAGGGTGCCCTCAGGGAACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'11-13,'11-11,12-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=1.000 C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTACCAAGAGCTAGCAGT
R:
CTGCTCCTTTGCCAGCTTCTG
Band lengths:
118-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]