HsaEX0027949 @ hg19
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131028249-131029553:-
Coord C1 exon
chr9:131029473-131029553
Coord A exon
chr9:131028566-131028604
Coord C2 exon
chr9:131028249-131028299
Length
39 bp
Sequences
Splice sites
3' ss Seq
CCTTTGACTCTTCCCCACAGAAA
3' ss Score
11.04
5' ss Seq
GAAGTAACG
5' ss Score
2.34
Exon sequences
Seq C1 exon
AGCCGGTACCAACAGCTAGCGGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAATATCACGATAGAGAAATTG
Seq A exon
AAACAACAGAACCAAGAAATTACGGATCAGTTGGAAGAA
Seq C2 exon
GAAAAGAAAGAATGCCACCAAAAGCAGGGAGCCCTAAGGGAGCAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'8-10,'8-9,9-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.830 C2=0.536
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(22.2=100)
A:
PF150351=Rootletin=FE(9.8=100),PF113073=DUF3109=FE(13.5=100)
C2:
PF150351=Rootletin=FE(12.9=100),PF113073=DUF3109=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCAACAGCTAGCGGTAG
R:
TAACTGCTCCCTTAGGGCTCC
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)