GgaEX1001068 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5633428-5636010:+
Coord C1 exon
chr17:5633428-5633508
Coord A exon
chr17:5635247-5635285
Coord C2 exon
chr17:5635948-5636010
Length
39 bp
Sequences
Splice sites
3' ss Seq
GCATCCATTTTCTTCTGTAGAAG
3' ss Score
7.65
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACACGTTACCAGGAGCTGGCAGTAGCCCTAGATTCCAGCAATCTAACTAACAAACAGCTCATTACAAAGATAGAGGAATTG
Seq A exon
AAGCAGCAGAACCAAGAAGCAGTGAATCAGCTGGAGAAG
Seq C2 exon
GAAAAGAAGGAGTTTGAACAGAAATTTTCTAAAGAGCAAGCAGCACTGAGAGAACAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'9-12,'9-10,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.454 A=0.769 C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAGCCCTAGATTCCAGC
R:
GTTCTCTCAGTGCTGCTTGCT
Band lengths:
118-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]