GgaEX0006706 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5000856-5003223:+
Coord C1 exon
chr17:5000856-5000915
Coord A exon
chr17:5001366-5001446
Coord C2 exon
chr17:5003185-5003223
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCATGTGCCCATCAGACA
3' ss Score
4.04
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCTACGTCATATGTGAATGGGGAAAGTGGTGTTTCTTCCACTAATATTAAGGAAATGGAA
Seq A exon
ACACGTTACCAGGAGCTGGCAGTAGCCCTAGATTCCAGCAATCTAACTAACAAACAGCTCATTACAAAGATAGAGGAATTG
Seq C2 exon
AAGCAGCAGAACCAAGAAGCAGTGAATCAGCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX3-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.600 A=0.370 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCATATGTGAATGGGGAAAGT
R:
CTTCTCCAGCTGATTCACTGC
Band lengths:
96-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]