GgaINT0124933 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5000856-5001446:+
Coord C1 exon
chr17:5000856-5000915
Coord A exon
chr17:5000916-5001365
Coord C2 exon
chr17:5001366-5001446
Length
450 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGCCTGCATGTGCCCATCAGACA
3' ss Score
4.04
Exon sequences
Seq C1 exon
TCTACGTCATATGTGAATGGGGAAAGTGGTGTTTCTTCCACTAATATTAAGGAAATGGAA
Seq A exon
GTAAGTTGCCATGAGCCTATGATTTTCTTATTTTCTAGTCTAAGTCAATTGTTGGGACTGTGCTAATGAGACCTAACTGAACACACAGTTCACATACGTTGTTGTCCAGTGCTGCCTTCTGCTGTGCTCGGGTAGCTGTGCTCAGCAGGAGTGGGTATTTCCAAGATACCTGAGGTATTTCTGGGGGGGCTTTGGGACCATTTGGCCTCAGTGCAACTCTTAGTTTTGATTCACTTTTATGGCAAAAAATGCCTGAGCAGAAAGCACAAGTAAGTTAATGTAAGTTAATGTCCCAGCTACTCTTGTCGGATCTGTAGATTGATTTGGGGAATCTGATTTTATCAAACTGTGATGATGATTTGTTTTTCTGTCCTTTTTAATTAATGCTTTTTTCCTCCCCTCCTCCTTTTCTGCCCCTTCCTTCTTCTCCTGCCTGCATGTGCCCATCAG
Seq C2 exon
ACACGTTACCAGGAGCTGGCAGTAGCCCTAGATTCCAGCAATCTAACTAACAAACAGCTCATTACAAAGATAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881:ENSGALT00000007792:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]