BtaINT0002395 @ bosTau6
Intron Retention
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98888035-98888365:-
Coord C1 exon
chr11:98888306-98888365
Coord A exon
chr11:98888116-98888305
Coord C2 exon
chr11:98888035-98888115
Length
190 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
Exon sequences
Seq C1 exon
TCTTCATCTTACATCAATGGGGAGGGCCTAGCATCTCCTGCTAATATAAAGAATCTGGAG
Seq A exon
GTAAGTGGGCCTACACTGTGGCCCAGTGACCCTGCAGGCCAGCCCTGCCCCCTACCTCCTCCCATGGCGGGGGCTGGGTGCCCCACCCAGCTGAGACAGCCCAGACACCCCCCAACCCTAATGATTGCTCTCTCTACCTCTCCCCCACCCCTCCTCCACCTCCTCCTCCTCCTCTCTGCATGCGCCTCAG
Seq C2 exon
AGCCGGTACCAAGAACTATCAGTAGCCCTGGACTCCAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317:ENSBTAT00000015044:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=NA C2=0.889
Domain overlap (PFAM):
C1:
PF0252012=DUF148=FE(21.8=100)
A:
NA
C2:
PF0252012=DUF148=FE(29.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTTACATCAATGGGGAGGG
R:
CAATTCCTCTATCTTGCTACTGAGT
Band lengths:
138-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development