HsaINT0070404 @ hg19
Intron Retention
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131029473-131029796:-
Coord C1 exon
chr9:131029737-131029796
Coord A exon
chr9:131029554-131029736
Coord C2 exon
chr9:131029473-131029553
Length
183 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
Exon sequences
Seq C1 exon
TCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAG
Seq A exon
GTAAGAGGCCCTGGGCCGTGGCCCAGTGACCCTGCAGGCCAGCCCTCCAACCTCCTCCCACAGCGGGGGCTGGGTGCCCCTCTGCCAGCTGAGACAGCCCACACACCCCCCAACCCTAATGATTGCTCTCTCTACCTCTCCCCCCAATCCTCCTCCAACTCCTCCTCTCTGCATGCGCCTCAG
Seq C2 exon
AGCCGGTACCAACAGCTAGCGGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAATATCACGATAGAGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-GOLGA2:NM_004486:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.642 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(15.2=100),PF113073=DUF3109=FE(20.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCGACATGTGTCAATGGG
R:
TCGTGATATTGAGTTGTTTGTTTGT
Band lengths:
130-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)