RnoINT0066271 @ rn6
Intron Retention
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11326847-11327158:+
Coord C1 exon
chr3:11326847-11326903
Coord A exon
chr3:11326904-11327077
Coord C2 exon
chr3:11327078-11327158
Length
174 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCTCTCTGCATGCGCCTCAGAGC
3' ss Score
6.16
Exon sequences
Seq C1 exon
TCTACATCCTACATCAACGGGGAGGGCCTCACGTCTTCCAACATGAAGGAACTGGAG
Seq A exon
GTAAGTGGCCTTGAATCATGGCCGAGCAACCCTTTACGCCAACCACCTATCTCCTCCTACAGGGACCTGGGTGCCCGCTGCCAGCTGAGACAGCCCACCACCCCCACCCCTAATGATGCTCTTTCTCCCTTTCCCCCATCCTTCCTCAACTCCTCCTCTCTGCATGCGCCTCAG
Seq C2 exon
AGCCGGTACCAAGAGCTAGCAGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAGTAGCACGATAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884:ENSRNOT00000016341:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACATCCTACATCAACGGGGA
R:
CAATTCCTCTATCGTGCTACTGAGT
Band lengths:
138-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]