GgaEX0006705 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5000327-5001446:+
Coord C1 exon
chr17:5000327-5000390
Coord A exon
chr17:5000856-5000915
Coord C2 exon
chr17:5001366-5001446
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTTGACTATTTTTCTTCTAGTCT
3' ss Score
7.14
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTCTCTGTCATCAACAGAAAGCCTCCGCCAGCTGTCTGAACAACTCAATGGCCTGGTTGCTCAG
Seq A exon
TCTACGTCATATGTGAATGGGGAAAGTGGTGTTTCTTCCACTAATATTAAGGAAATGGAA
Seq C2 exon
ACACGTTACCAGGAGCTGGCAGTAGCCCTAGATTCCAGCAATCTAACTAACAAACAGCTCATTACAAAGATAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX3-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.600 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAACAGAAAGCCTCCGC
R:
TCCTCTATCTTTGTAATGAGCTGT
Band lengths:
134-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]