HsaEX6063197 @ hg38
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128267194-128267997:-
Coord C1 exon
chr9:128267934-128267997
Coord A exon
chr9:128267458-128267517
Coord C2 exon
chr9:128267194-128267274
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGCACTCTCGTCTCTTATAGTCT
3' ss Score
9.17
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GACTTTCTCATCAACCGAGAGCCTGCGACAACTCTCCCAACAGCTCAATGGTCTTGTTTGTGAG
Seq A exon
TCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAG
Seq C2 exon
AGCCGGTACCAACAGCTAGCGGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAATATCACGATAGAGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'16-11,'16-10,17-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.650 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
PF0157614=Myosin_tail_1=PU(8.5=50.0)
C2:
PF0157614=Myosin_tail_1=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCTCATCAACCGAGAGCC
R:
TCGTGATATTGAGTTGTTTGTTTGT
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains