HsaEX6063197 @ hg19
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131029473-131030276:-
Coord C1 exon
chr9:131030213-131030276
Coord A exon
chr9:131029737-131029796
Coord C2 exon
chr9:131029473-131029553
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGCACTCTCGTCTCTTATAGTCT
3' ss Score
9.17
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GACTTTCTCATCAACCGAGAGCCTGCGACAACTCTCCCAACAGCTCAATGGTCTTGTTTGTGAG
Seq A exon
TCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAG
Seq C2 exon
AGCCGGTACCAACAGCTAGCGGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAATATCACGATAGAGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'6-7,'6-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.642 C2=0.074
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(15.9=100),PF113073=DUF3109=PU(16.7=72.7)
A:
PF150351=Rootletin=FE(15.2=100),PF113073=DUF3109=FE(20.8=100)
C2:
PF0157614=Myosin_tail_1=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCTCATCAACCGAGAGCC
R:
TCGTGATATTGAGTTGTTTGTTTGT
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)