MmuEX6100527 @ mm9
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32152628-32153296:+
Coord C1 exon
chr2:32152628-32152691
Coord A exon
chr2:32153041-32153097
Coord C2 exon
chr2:32153274-32153296
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGAGGTATTGTCTCTCCTAGTCT
3' ss Score
5.66
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GACTTTCTCATCGACTGAGAGTCTGCGACAACTTTCTCAACAGCTCAATGGCCTTGTGTCTGAG
Seq A exon
TCTACATCCTACATCAACGGGGAGGGCCTCACATCTTCCAACATGAAGGAACTGGAG
Seq C2 exon
AACCGGTACCAAGAGCTAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'7-15,'7-14,9-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=0.909 C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
PF090796=Cdc6_C=PU(26.7=84.2),PF053776=FlaC_arch=PU(10.9=26.3)
C2:
PF090796=Cdc6_C=FE(43.3=100),PF053776=FlaC_arch=FE(56.5=100),PF106024=RPN7=PU(12.5=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACTGAGAGTCTGCGACA
R:
TGCTAGCTCTTGGTACCGGTT
Band lengths:
76-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: