GgaEX0006705 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5632389-5633508:+
Coord C1 exon
chr17:5632389-5632452
Coord A exon
chr17:5632918-5632977
Coord C2 exon
chr17:5633428-5633508
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTTGACTATTTTTCTTCTAGTCT
3' ss Score
7.14
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTCTCTGTCATCAACAGAAAGCCTCCGCCAGCTGTCTGAACAACTCAATGGCCTGGTTGCTCAG
Seq A exon
TCTACGTCATATGTGAATGGGGAAAGTGGTGTTTCTTCCACTAATATTAAGGAAATGGAA
Seq C2 exon
ACACGTTACCAGGAGCTGGCAGTAGCCCTAGATTCCAGCAATCTAACTAACAAACAGCTCATTACAAAGATAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX4-1/2=C1-2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=0.887 C2=0.454
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAACAGAAAGCCTCCGC
R:
TCCTCTATCTTTGTAATGAGCTGT
Band lengths:
134-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]