BtaEX6046368 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98888035-98888832:-
Coord C1 exon
chr11:98888769-98888832
Coord A exon
chr11:98888306-98888365
Coord C2 exon
chr11:98888035-98888115
Length
60 bp
Sequences
Splice sites
3' ss Seq
AGCCCTTTCGTCTCTCCTAGTCT
3' ss Score
8.37
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCCTTTTCATCCACCGAGGGCCTGCGACAGCTGTCTCAGCAGCTCAACGGTCTTGTGTCCGAG
Seq A exon
TCTTCATCTTACATCAATGGGGAGGGCCTAGCATCTCCTGCTAATATAAAGAATCTGGAG
Seq C2 exon
AGCCGGTACCAAGAACTATCAGTAGCCCTGGACTCCAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'9-7,'9-6,10-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=0.867 C2=0.889
Domain overlap (PFAM):
C1:
PF0252012=DUF148=PU(18.4=72.7)
A:
PF0252012=DUF148=FE(21.8=100)
C2:
PF0252012=DUF148=FE(29.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCATCCACCGAGGGCC
R:
TCCTCTATCTTGCTACTGAGTTGT
Band lengths:
138-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]