RnoEX6016436 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11326437-11327158:+
Coord C1 exon
chr3:11326437-11326500
Coord A exon
chr3:11326847-11326903
Coord C2 exon
chr3:11327078-11327158
Length
57 bp
Sequences
Splice sites
3' ss Seq
AGAGGTATTGTCTCTCCTAGTCT
3' ss Score
4.19
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACTTTCTCATCGACTGAGAGTCTGCGACAACTTTCTCAACAGCTCAATGGCCTTGTGTCTGAG
Seq A exon
TCTACATCCTACATCAACGGGGAGGGCCTCACGTCTTCCAACATGAAGGAACTGGAG
Seq C2 exon
AGCCGGTACCAAGAGCTAGCAGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAGTAGCACGATAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'8-9,'8-7,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.842 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACTGAGAGTCTGCGACA
R:
TCCTCTATCGTGCTACTGAGTTGT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]