DreEX0035470 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1410173-1413664:-
Coord C1 exon
chr5:1413601-1413664
Coord A exon
chr5:1413345-1413404
Coord C2 exon
chr5:1410173-1410253
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCTGTTTAATTCAGTCA
3' ss Score
6.78
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
GCCGCTGTCGTCCACCGAAAGCCTCCGACAGCTCTCTCAGCAGCTCAACGGTCTGCTCTCTGAG
Seq A exon
TCATCAACACACATCAATGGTGACAGCGATCCACCCGCGGTCAATGAGAAGGAGCTGGAG
Seq C2 exon
ACTCGTAATCAGGAGTTATCCGCTGCTCTGGACTCCAGCGCTCTCACCAACACACAGCTCACGTCCAAACTGGAGACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACCGAAAGCCTCCGA
R:
GTCTCCAGTTTGGACGTGAGC
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]