GgaINT0124934 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5001366-5003223:+
Coord C1 exon
chr17:5001366-5001446
Coord A exon
chr17:5001447-5003184
Coord C2 exon
chr17:5003185-5003223
Length
1738 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
GCATCCATTTTCTTCTGTAGAAG
3' ss Score
7.65
Exon sequences
Seq C1 exon
ACACGTTACCAGGAGCTGGCAGTAGCCCTAGATTCCAGCAATCTAACTAACAAACAGCTCATTACAAAGATAGAGGAATTG
Seq A exon
GTAAGAAACAATCCAACCAACCAGTTTGATATTGTCTCTGCTGCTCCTCCATGCTCTCTGGGTGTCTGCAAGGCTATGGGTTCTCTTATAGCACCACAAGGAAGGCTGCTTTCATGGCACTTTGAGTGGAACAAAACGGGCTGTACGGGAGACCTGTTAGGAAGATCAAAGTCTCAGGCCACTTATGGTTGCATCAGCTCATCTGAGAACAAGAAGCACAGCTCTGCTGTTTCTTCTTAAATTTACTGTTGCTCTCACTGTGTTTTCTGTGGATGATAAACATCCTGATCAAACAACTATTTCTGGGCCTGGTCTGAATCCCTGAAATACAGAACTCTCGTGCTGGCAGCAGTGTGAAAACCTATTGCTGCAGGTGGTGATGCTGTTCTAAATATATTAGCAGAGTGGGAGCAGTAGGTCTAAGAGAGAGCCTGGGGCTGCTTTCTGATCGTATCCTCAGCTTCTCTTGGCACTATGAATGAACTGCTTTGTCCTGTGGCTTGCATGGATTCCTGCTGCTGCTTTTCAGCCTTCAGCTTTAACACTGCAAGAAACGTAGCTAAGTGGACTTGTTTCGGTCTGAAAAGAGCCTTTCTTGGTTTGAAATACTTTTCCCCATTTTGTTCCTCTCACACCACTCTTTTTTTCCAAAGTCCACCATTTCCCAGTGCACCCCACAAACCCCTCCTGTGTTATTTTTGGTTTTGAGTCCTTTTGGTTTCATTCTGTTTCTGGTTTGTCTTTCAGCTGGGCTGCAGGGGTAGCTGGTAGTGAGGGCAGTGCCTGCCCAGGACTCCTCGTTTGCCTGCTTTCTGACAGGCACATGAAATGCTGTCTGGAATTACACAGGGCCTTTGCTGCATTTGCAGTCTTGTTCTCTTTGTTTTGGTTGTGTTCTGTGCTGGCCTTGTTAGACTCAAAACCTCAAATTCATCAGCTTCCCAGCTGCAGTCGTGTTTCAAAGTGAGCTTGAAACTGAAGTAGTCAAAATGGGCTGATGTCTGTCCTTTGGAAAGGGGAAATACACCATGCATGTAGCTTAGATGTGGGGCATCTGTGTGAAACTGCCACGAGGACAACAGCAGTGAGTAGCAAATGCTCCACAGCACCCACATCTTCACACAGTTTGTGTGGCAGCCCAGTGGGCAGCTGACAGTTCTGATGTCTTTCTCCCCATGTCTAAAGATGCACTCTGTACAGTCAATACTTCCAAAGACTTCACCCACAAGACCAAAACTGACCAGGACAGGATGGTGCCCTTTCTCTGCATACCAGCTCTTTTTCATACCAGCTTCTGCAGGAGCCTGCCAGCATTAGTGAACTTCTGCATGATTTAAAGGCCAGTTGCCACATGGGATAAAAGTTGAAGGGCTCAGCTGAAGCACAGTGCTGTGCTGTGGCTTTGGGTTTTTTAGATGCATTTTTGGTCATTCCCCTGCTGCATCAGGGTTATCATTCATGTCAGAGATGTGGGGTGAAAGCGTAACTGAAGTTGTTGGATGCTCAGATACATACAGGGGTTTTGTAGTGGTGTTTGTGAATAACTGCAGTAGGAATAACTGAAGGAAGCCCCAAATCTATTATTTTAATAGATAGTCTTCTTGGTCTTCTACATAAAAAGATAACGGGAACTGTTTGCATTAATTGGGCGTGAATCCTACTTCAGTGAAGTGAAAATATGCTTCAGCAGTATGAGAATATTTCCTGCTAACACTGATGCATCCATTTTCTTCTGTAG
Seq C2 exon
AAGCAGCAGAACCAAGAAGCAGTGAATCAGCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881:ENSGALT00000007792:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]