MmuINT0072175 @ mm9
Intron Retention
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32153274-32154158:+
Coord C1 exon
chr2:32153274-32153354
Coord A exon
chr2:32153355-32154119
Coord C2 exon
chr2:32154120-32154158
Length
765 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TCCTTTGACTCTTCCCACAGAAA
3' ss Score
10.52
Exon sequences
Seq C1 exon
AACCGGTACCAAGAGCTAGCAGTAGCCCTGGACTCCAGCTATGTAACAAACAAACAACTCAGTAGCACGATAGAGGAATTG
Seq A exon
GTAAGAGTCCAGTGGGGTCCCTGATTCTTGCTGCCAGTCCTGGGCTTCAGTTTCCCCTTTGGGCTCTGAAGAAAGGGACTAGGGGGCCCCTGGGACCAAGGGGAATGGAAAACCTGGGGCTTGAGTCTCAGCTGGAGGCACCCAGAGCATAGAGCATGCAGCATGGATCTTGTGGCTCTCCTCTCTGCCTCCACTCTGTACTGCAGACTCATCCTGAGTCCTCGCCCTACTTGTCCTGAGCTCGGTGCCTCCAGTAGAGGGGAACACAACCCCAGTTGGTTGTCAGGACCCCATGTCCTATTGGCTTAGCCCCTCATTTGCTCTTTGATTTTGGCCACACCACTCCCTGGGTTTGAGTTTCCTGTTAGCAGATTTGGAGTGGGTCAGAGACCTCTGTCTACTCTGAAGAGGCAAGAGTTGGAAAGCTCATTGACTCATCAGAAACAAGTGCTCTCCCATTCATCTCTTGGTTGTGCCCACAAGACACGCTCAGTTTTAATTCGACACACTCTGCCAAGTCCCAAGTTGGCAGAGGGTAGTCATCTTTCTCACACTTGTTTCTAGAGTTACTCTCCTTTACTGTGAACCCAGTTGCACAGTTGTGAGTGAGAGGCAGGGAGAATAAATACCCTGGGAGCTTGAGGAATTGGTTAGCTCATGGACCCATGTGGCTCTGAGCACCTTTCTCAAATCCATCCTCCCGTTCGGTCTGGGGTGTCATGAAAGGGGCCAGGCCTAGTCCGCTTCCTTTGACTCTTCCCACAG
Seq C2 exon
AAACAACAGAACCAAGACACTCTGGATCAACTGGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-Golga2:NM_001080968:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090796=Cdc6_C=FE(43.3=100),PF053776=FlaC_arch=FE(56.5=100),PF106024=RPN7=PU(12.5=22.2)
A:
NA
C2:
PF090796=Cdc6_C=FE(20.0=100),PF053776=FlaC_arch=FE(26.1=100),PF106024=RPN7=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: