BtaINT0002396 @ bosTau6
Intron Retention
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98887207-98888115:-
Coord C1 exon
chr11:98888035-98888115
Coord A exon
chr11:98887246-98888034
Coord C2 exon
chr11:98887207-98887245
Length
789 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TCCTTTGCCTCTCCCCGCAGAAA
3' ss Score
13.82
Exon sequences
Seq C1 exon
AGCCGGTACCAAGAACTATCAGTAGCCCTGGACTCCAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTG
Seq A exon
GTAAGAGTCCGGTGTTGTCCCCTGATCCATGCTGCCAATATGGGGCTCCGGTCTCACCCTGGGGCTCTTGAAGAAAGGGGCTGGGGATCCCTGGTGCCAAGGGAGAAGGGGGTGCTGGGGGGCCTAGGTCTCAGCTGGAGGGACCCCGGAGCATGGCATGCAGCATGGCTCTCTCTGTGGCTGCCCTCTTTGCCTACTCTGTTCTCCAGACACCTCTGCTCGAGTCCTCCCCACCTTGCCATGGGTCTGTTGCCTGTAGGGGAGGCACTAGCTTGACTGATGTGTTCCAGCCCTGACGCAGCCCCTGATTTGTTCCCACTTCGACCTTGGACAAGTCACCTCTCCTCCTTGGCCTTTAGTTTCCTGAGGAGGTAGAATCAGAGGGTGTCCAAGGTCCCTTTTAAGCTCAAAAAAAGATTTCAGGGTCCTATTCATTCATGTCGTATCGGTGTTAAGAACAGAACCTGGCCAGTGGTGTGTTTGCTCAGCAAACATTCCTTGAATGCGAGCTGGCAGAGGGTGGTCTTCACCTTCTCAGACTCCATCTCTAGAGGTTTATGTCATTGTCCCTTCAAGGGAATCAGATCCAGACTCTTGCTGCTGTAGCCATGAGCAAAACCTGCCAAGGCTCAAAGACTCTTAGCTTGAGAAGCATTCGTTCATTCATGTCCCCGTGAACCCTCCCTTTCTAATCCCTTCCTGGCCCCTGCCTGTGGCCCCTCCTCCTTGGTCTGAGGATCATGGGGGAGGAGGACAACCTCAGTCACTTTCCTTTGCCTCTCCCCGCAG
Seq C2 exon
AAACAAGAGAACCAGGAAACTTTGGATCAGCTGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317:ENSBTAT00000015044:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0252012=DUF148=FE(29.9=100)
A:
NA
C2:
PF0252012=DUF148=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development