MmuEX0009445 @ mm9
Exon Skipping
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30042353-30043337:-
Coord C1 exon
chr2:30043209-30043337
Coord A exon
chr2:30042707-30042827
Coord C2 exon
chr2:30042353-30042429
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTGACCTTGGCTCCCACAGGTA
3' ss Score
10.27
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
AGTCCTGCTCCTAAGGGGCAGCTGGGATCCAGCAATGATTGGCAGCTGGACCCCACAGAACTGGCCAGCAAGTTCACACCTCGCACCAAGATCCTGGTCCTCAACACACCCAACAACCCTCTGGGAAAG
Seq A exon
GTATTCTCTAAGAAGGAGCTGGAGCTGGTGGCTGCACTGTGCCAACAGCATGATGTCCTGTGCTTCTCTGATGAGGTCTACCAGTGGCTGGTCTATGATGGGCACCAGCACATCAGCATTG
Seq C2 exon
CCAGCCTCCCTGGCATGTGGGAACGGACACTGACCATCGGCAGCGCAGGCAAAAGCTTCAGTGCCACTGGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.8=100)
A:
PF0015516=Aminotran_1_2=FE(10.3=100)
C2:
PF0015516=Aminotran_1_2=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCTCCTAAGGGGCAG
R:
GCTGCCGATGGTCAGTGTC
Band lengths:
172-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: