GgaEX6015134 @ galGal3
Exon Skipping
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5914913-5916093:-
Coord C1 exon
chr17:5915965-5916093
Coord A exon
chr17:5915660-5915780
Coord C2 exon
chr17:5914913-5914989
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCGCTCCCTGCCTGCTGCAGGTG
3' ss Score
9.53
5' ss Seq
TCGGTATGC
5' ss Score
7.85
Exon sequences
Seq C1 exon
AAAGCTCCAAAAGAAGGAAAATTGATGTCGAGTGCAGATTGGCAGCTGGACCCGGCCGAACTGGCTTCTAAATTCAGTGAGCAGACAAAAGCCATCGTCCTGAACTCACCCAACAACCCTCTGGGCAAG
Seq A exon
GTGTTCAGCCGAGGGGAGCTGGAGCTCATTGCAGACCTGTGCGTGAAGCACGACGCCCTTTGCATCAGCGATGAAGTGTACGAGTGGCTGGTGTACGACGGCAAGCAGCACATCCGCATCG
Seq C2 exon
CCAGTTTGCCAGGGATGTGGGACCGCACAGTGATCATTGGGAGTGCTGGAAAAACCTTCAGTGTCACTGGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-'10-8,'10-7,11-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.8=100)
A:
PF0015516=Aminotran_1_2=FE(10.3=100)
C2:
PF0015516=Aminotran_1_2=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCAAAAGAAGGAAAATTGATGT
R:
CTTCCAGCCAGTGACACTG
Band lengths:
204-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]