MmuALTD0015001-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036752 | Tubb2c
Description
tubulin, beta 4B class IVB [Source:MGI Symbol;Acc:MGI:1915472]
Coordinates
chr2:25079644-25080048:-
Coord C1 exon
chr2:25079948-25080048
Coord A exon
NA
Coord C2 exon
chr2:25079644-25079752
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGCGTACGC
5' ss Score
2.47
3' ss Seq
AACGCCCGACTCCCTTGCAGTTC
3' ss Score
6.5
Exon sequences
Seq C1 exon
AGGCTAGGTTTCTGCGAGCCAGACGCCACTGGGACAGCCAGCCGGGGAAGATGGCGGAAGCGGCCCGGAGCGTCGCCCTTCATTGCGTCCTGGATACCGGC
Seq A exon
NA
Seq C2 exon
TTCTGGGAGGTAATCAGCGACGAGCATGGCATTGATCCCACTGGCACTTACCACGGAGATAGCGACCTCCAGCTGGAGCGCATCAACGTGTACTACAACGAAGCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036752-2-0,3-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.135
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009120=Tubulin=FE(16.2=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGCGTCCTGGATACCG
R:
CGGTGGCTTCGTTGTAGTACA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: