MmuEX0019739 @ mm9
Exon Skipping
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31468551-31473039:+
Coord C1 exon
chr2:31468551-31468627
Coord A exon
chr2:31470231-31470302
Coord C2 exon
chr2:31471018-31473039
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGTTTTCTGCACAGGCC
3' ss Score
9.97
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAACAAGTCCCAA
Seq A exon
GCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTATTACAAAAAGCAGA
Seq C2 exon
GTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAGGTCTGTAGCCAGTCCCCAGCGCCATGATGCCACGCAGCCTTTGTGCTTGCCTAGCCCCAGGGTGAGCACAGTGGCCTGTGGGGGTCTCCTCTGTCCCTCCACTCCATAACTGAGCTTGAGCAGAGGCTGCTTCTAGCTCTGGGCCTAGAAACCCTGACTATACCTAAGTGCCCTGGGTCTGCAGTGAGCCAGGACCACTCCAGCAGTAGTTCTTGCAGAGAGTGGCCAGGTTGGGCCTTTACCTGCACAGCACCTTTGGGGCCAAGCAAGTGGAGGGCCAGCTTGGCCTCTTTCTGTGTAGAAATGAGGAGGGCTCTCTCCCGTTCTCAGCCAAGAAGGAGCTCTCTTTCCTTGGACCTTGGGGGCAAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=1.000 C2=0.589
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(73.3=88.0)
C2:
PF090055=DUF1897=PD(23.3=13.5),PF090055=DUF1897=WD(100=63.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTTCTGACCCAAGGCTG
R:
TGCCCTAAAGTCTGCCCATAGA
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: