DreEX0004572 @ danRer10
Exon Skipping
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:875585-881489:+
Coord C1 exon
chr5:875585-875653
Coord A exon
chr5:881190-881261
Coord C2 exon
chr5:881359-881489
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTGTCGTTTGCAGGTC
3' ss Score
12.22
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTCACAACGGCTCTCAGAGCGGACAGATGGACTACTCCAAAGCCTGGGAGCAGTATTATAAGAAGCTAG
Seq A exon
GTCAGCAGAACCAGGGCCAGAGCAGCGGCCCCGACTACAGCAAAGCCTGGGAGGAGTATTACAAGAAGCAGA
Seq C2 exon
CTCAGGCAGCCGGACCGGGCTCTCAGCAGAGTTCTCCTCCAGACTACAGCGCCGCCTGGGTGGAGTATTACAGACAGCAGGGAGCTTATTACGGCCAGGGACAAACACAGGCCCCCGGCCTCCCGGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896-'21-26,'21-24,22-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=1.000 C2=0.706
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(75.9=91.7)
A:
PF090055=DUF1897=PD(20.7=24.0),PF090055=DUF1897=PU(71.0=88.0)
C2:
PF090055=DUF1897=PD(25.8=19.0),PF090055=DUF1897=WD(100=76.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGAGCGGACAGATGGA
R:
GTGTTTGTCCCTGGCCGTAAT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]