RnoEX0037102 @ rn6
Exon Skipping
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10223307-10226087:-
Coord C1 exon
chr3:10226011-10226087
Coord A exon
chr3:10224176-10224247
Coord C2 exon
chr3:10223307-10223434
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGTTTTCTGCACAGGCC
3' ss Score
9.97
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAGCAAGTCCCAA
Seq A exon
GCCAGCAGAGCCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAAGACTATTACAAAAAACAGG
Seq C2 exon
GTCACACCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCCGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=0.893 C2=0.651
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(66.7=88.0)
C2:
PF090055=DUF1897=PD(30.3=23.3),PF090055=DUF1897=WD(100=74.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTTCTGACCCAAGGCTG
R:
TGCCCTAAAGTCTGCCCATAGA
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]