DreEX0004577 @ danRer10
Exon Skipping
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:875432-881261:+
Coord C1 exon
chr5:875432-875508
Coord A exon
chr5:875585-875653
Coord C2 exon
chr5:881190-881261
Length
69 bp
Sequences
Splice sites
3' ss Seq
AGCTTTTACTGCTGTTTCAGGTC
3' ss Score
7.93
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGGGCCGCAGACGTTCATGACCGGAGGTTGGGGCACCACCTATCAGACGTGGCAGCCTCAGAGTCAGCAGGACCCCA
Seq A exon
GTCACAACGGCTCTCAGAGCGGACAGATGGACTACTCCAAAGCCTGGGAGCAGTATTATAAGAAGCTAG
Seq C2 exon
GTCAGCAGAACCAGGGCCAGAGCAGCGGCCCCGACTACAGCAAAGCCTGGGAGGAGTATTACAAGAAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.625 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(75.9=91.7)
C2:
PF090055=DUF1897=PD(20.7=24.0),PF090055=DUF1897=PU(71.0=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACGTTCATGACCGGAG
R:
TCTGCTTCTTGTAATACTCCTCCCA
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]